aligner< T > Class Template Reference

#include <aligner.h>

Inheritance diagram for aligner< T >:
Inheritance graph
[legend]

List of all members.

Classes

struct  alin

Public Member Functions

 aligner (const string fname, int const _debug=0)
 ~aligner ()
alinalign (const char *a, const int tj, const char *b, const int ti, const int mode=SEMILOCAL)

Static Private Member Functions

static T max (const T &a, const T &b)

Private Attributes

phd< T > * sc
score
int debug

template<typename T = int>
class aligner< T >


Constructor & Destructor Documentation

template<typename T = int>
aligner< T >::aligner ( const string  fname,
int const   _debug = 0 
) [inline]
template<typename T = int>
aligner< T >::~aligner (  )  [inline]

Member Function Documentation

template<typename T = int>
alin* aligner< T >::align ( const char *  a,
const int  tj,
const char *  b,
const int  ti,
const int  mode = SEMILOCAL 
) [inline]

Referenced by simplesearch::search().

template<typename T = int>
static T aligner< T >::max ( const T &  a,
const T &  b 
) [inline, static, private]

Referenced by aligner< int >::align().


Member Data Documentation

template<typename T = int>
int aligner< T >::debug [private]

Referenced by aligner< int >::aligner().

template<typename T = int>
phd<T>* aligner< T >::sc [private]
template<typename T = int>
T aligner< T >::score [private]

The documentation for this class was generated from the following file:
Generated on Tue Jul 27 16:29:30 2010 for FreeLing by  doxygen 1.6.3