#include <aligner.h>
Classes | |
struct | alin |
Public Member Functions | |
aligner (const string fname, int const _debug=0) | |
~aligner () | |
alin * | align (const char *a, const int tj, const char *b, const int ti, const int mode=SEMILOCAL) |
Static Private Member Functions | |
static T | max (const T &a, const T &b) |
Private Attributes | |
phd< T > * | sc |
T | score |
int | debug |
aligner< T >::aligner | ( | const string | fname, | |
int const | _debug = 0 | |||
) | [inline] |
alin* aligner< T >::align | ( | const char * | a, | |
const int | tj, | |||
const char * | b, | |||
const int | ti, | |||
const int | mode = SEMILOCAL | |||
) | [inline] |
Referenced by simplesearch::search().
static T aligner< T >::max | ( | const T & | a, | |
const T & | b | |||
) | [inline, static, private] |
Referenced by aligner< int >::align().
Referenced by aligner< int >::aligner().
Referenced by aligner< int >::align(), aligner< int >::aligner(), and aligner< int >::~aligner().
Referenced by aligner< int >::align(), simplesearch::comparator::operator()(), and simplesearch::search().