align(const char *a, const int tj, const char *b, const int ti, const int mode=SEMILOCAL) | aligner< T > | [inline] |
aligner(const string fname, int const _debug=0) | aligner< T > | [inline] |
debug | aligner< T > | [private] |
max(const T &a, const T &b) | aligner< T > | [inline, private, static] |
sc | aligner< T > | [private] |
score | aligner< T > | [private] |
~aligner() | aligner< T > | [inline] |